Best viewed with Windows Explorer
Home Research Publications Collaborations Tools Labmeeting Schedule Members

Research



Terra Preta (TP)
Transgenic Crop Impacts
Apple Replant Disease
Metalliferous Peats
2-Dimentional Gel Electrophoresis
Soil Solarization
System of Rice Intensification (SRI)
Biological Soil Quality Indicators
Multi-level Comparisons of Organic and Integrated Fruit Production (IFP)

Janice's research program focuses on three main areas:

  • The influence of soil management practices and transgenic crops on soil microbial activity, abundance and community structure.
  • The development of biofertilisers and biopesticides for use in low-input agriculture and in managing for soil health indicators such as glomalin.
  • Measurement of soil microbial community structure under novel cropping systems such as the System of Rice Intensification (SRI) in South Asia and Terra Preta in the Brazilian Amazon.

The common theme in my research is the use of molecular methods to address previously intractable ecological questions about microbial life in the soil environment, including issues of the survival of introduced bacteria, the persistence of genes conferring enhanced survival and competitiveness, and mechanisms of genetic exchange. Of particular interest are the consequences of these activities for microbial population structure and functioning in agroecosystems. Molecular methods are being used to define dominant microbial populations and monitor shifts within them in response to varying management practices. In all of my programs, I try to maintain a balance between advancing our understanding of basic ecology and microbiology while at the same time applying these principles to help resolve applied problems in agricultural management.

 

 
Brazilian scientists examine color of Terra Preta soil, which is often darker than standard Munsell color charts. (Left) The A horizon of Terra Preta soils can be up to 1 meter in depth. (Right) Oxisols are typically low in organic matter and available nutrients.
Pottery sherds found in Terra Preta soils in the Brazilian Amazon. Terra Preta researchers take a trip to the field.
Centro de biotecnologia amazonica
Terra Preta (TP)

Terra Preta (TP) is a black earth-like anthropogenic soil with enhanced fertility due to high levels of black carbon (charcoal) and nutrients such as N, P, K, and Ca embedded in a landscape of infertile soils. TP soils found in the Brazilian Amazon are known for their unique soil fertility properties. However, their biological properties remain a mystery.  We believe the soil microorganisms specifically found in TP soils can serve as a major contributor to C sequestration by helping to mineralize as well as stabilize certain fractions of soil organic matter. To this end, we are using  traditional culturing, molecular, and microscopic techniques to assess microbial abundance and diversity.

Learn more about Terra Preta: Lehmann's site, Grossman's site

Project members: Julie Grossman, Brendan O'Neill, Lauren Mc.Phillips

 
Transgenic Crop Impacts

The potential benefits of transgenic corn and rice are wide ranging and economically appealing, while the concern over genetically modified organisms (GMOs) and their unintended impacts on the environment presents strong opposition. This debate has lead to the study of the full range of impacts of both transgenic Cry3Bb corn and Cry1Ab rice on aspects of plant C allocation as well as possible influence on the soil microbial community. Specifically, we are investigating the impact of these transgenic species on diversity and community function of bacteria in soil as well as abundance and diversity of arbuscular mycorrhizal fungi in soil.

Project members: Luz Marina Londono, Kai Xue, Raquel Serohijos

 
Experimental orchard at Lansing NY: The trial compares four different ground cover management strategies in the apple tree rows, pre-emergence herbicide application, postemergence herbicide application, biannual bark-mulch application and a mowed grass cover. Over the past 13 years, both herbicide treatments lead to reduced soil-organic matter content in the upper soil layers, whereas mulch application more than dublicated the soil organic matter content.  Presently we are conducting seedling-biotests to evaluate the effect of the groundcover management on the ARD-complex. Angelika Rumberger
Comparison of growth of 14 rootstock genotypes grafted with 'Mutsu' in soil collected in three NY-State apple growing regions. The heat in summer 2005 interferred somewhat with the experiment: Note brown edges of the leaves, a sign of heat-stress. Tree growth differed drastically depending on rootstock genotype: CG.6589 thrived under the hot conditions in 2005, while G.30 stayed rather small.
Apple Replant Disease

Apple Replant Disease (ARD) is a disease complex that affects young apple trees in replanted orchards and is a serious problem in many old orchard sites surveyed around NY. Typical symptoms are death of fine feeder roots, stunted above and below- ground growth, especially during the early years following replant, leading to substantial yield losses. In most sites, biotic factors have been implicated, with soil-borne fungi, bacteria, nematodes, actinobacteria and oomycetes variously cited as causal pathogens in site-specific combinations. Our research focuses on two aspects of ARD management: (1) the use of ARD tolerant rootstock breeds, (2) the impact of groundcover management in the precious orchards on the ARD severity at replant.

Project members: Angelika Rumberger, Shengrui Yao

 
Willow hedgerow along an peat agricultural field.
Soil sampling during the wet season deep in the peat.
A zone of Zinc phytotoxicity is evident at the center of a grower's field where the crop's tolerance is exceeded.
One soil core displaying the depth stratification of the peat above calcareous marl.
Metalliferous Peats

Naturally occurring peat soils in Western NY contain anomalously high concentrations of Zn and Cd. The availability and cycling of these metals is driven primarily by shifting microbial populations as a result of the changing soil environment. We believe characterization of the organisms in this environment may help us better understand the biogeochemical cycles of Zn and Cd. And have been able to use this system as model to further methods development in soil microbiology.

Project member: Tarah Sullivan

 
2-Dimensional Gel Electrophoresis

UNDER CONSTRUCTION!!

Project member: Chris Jones

 
Rice field trials Khumaltar, Kathmandu.
Solarization Field Trial in Nepal, before and after the plastic mulch.
Women transplanting rice.
Rice ready for harvest.
Women treshing rice.  
Soil Solarization

The Indo-Gangetic Plains of South Asia support 13.5 million hectares of rice-wheat cropping systems which currently feed over one billion people. The intensification of agriculture in this region since the 1970's has rewarded farmers with more than a two-fold increase in rice and wheat yields. However, this continuous cropping has also exacerbated the problems of weeds, pests and disease and there is now evidence that productivity is not being sustained as rice and wheat yields are stagnating and even declining despite increasing both use and amounts of agrochemical inputs. Soil solarization is a management practice that been shown to help ameliorate pest and disease problems and is an accessible, low-risk investment for small farmers with the potential to dramatically improve yields. Solarization involves passively heating the soil with polyethylene sheeting several weeks prior to planting rice. Field trials were conducted in Nepal to determine the effects of soil solarization on the bacterial, fungal and nematode communities in rice and wheat.

Project member: Steve Culman

 
System of Rice Intensification (SRI)

The system of rice intensification (SRI) is a novel method for rice cultivation that has been adopted by ~16 developing Asian countries. It involves changes in five main areas of paddy management: seedling age, seedling number, spacing, irrigation, and fertilizer. The aim of this project is to understand how microbial processes in the nitrogen cycle as well as bacterial community are affected by the type of rice cultivation system.

Project member: Thanwalee Sooksa-nguan (JiJY)

 
Biological Soil Quality Indicators

Physical and chemical indicators of soil quality are well explored and components are readily assayed in fee-for-service soil laboratories all around the world. However, despite the significant role of soil biology in nutrient cycling, this aspect s poorly understood and not easily assayed. This project attempts to not only enhance understanding of the precise role of soil biology in soil quality, but to also develop simple assays that may be offered as a part of soil quality assessments in fee-for-service labs. To do this, we are measuring aspects of soil microbial community size, activity, and diversity as well as attempting to correlate aggregate stability with soil glomalin content.

Project member: Dan Clune

 
Pictured above are the Rinieri side-sweep subsurface cultivator (top left and right), the comparative effects of Roundup versus the Rinieri (bottom left) and the Wonder Weeder (bottom right). During the 2004 and beginning if the 2005 season the Rinieri was used a total of three times, but inadequately controlled weeds in the organic plots compared to the IFP plots. Grass, which is the predominant weed in this orchard, was quickly able to re-root after being cut by the Rinieri and was never effectively controlled. The Wonder Weeder features several gangs of lilliston cultivators that should provide more aggressive action against grass and other weeds, with fairly low impact on soil quality.
This picture shows the type of protective kaolin clay deposit that is necessary to provide complete protection of foliage and fruit in the OFP treatment. In 2004, a wet year, it was difficult to maintain the necessary protective film of kaolin clay on trees in the organic system and eleven applications were needed; however, only four kaolin applications were needed in 2005. One of the weaknesses of the organic system appears to be the cost of the multiple applications needed to maintain the coverage of kaolin and the negative effects of the kaolin on predacious mites. Further experimentation with application rates and timing in 2006 should help to determine the appropriate use of this material.
To illustrate how severe insect damage can be on unprotected apples in the Northeast, this picture shows an unsprayed Liberty apple. Plum curculio weevils (Conotrachelus nenuphar) are responsible for the damage. This pest has been especially difficult for organic apple growers to control in the past, but was effectively suppressed in both the organic and IFP treatments.
Multi-level Comparisons of Organic and Integrated Fruit Production (IFP)

Until recently there were only a limited number of organic and integrated fruit production (IFP) pest control technologies available to combat the large disease and insect complexes in the Northeast. This lack of tools has resulted in limited adoption of these alternative farming systems for apple production. In 2004, a 0.9 ha experiment comparing organic and IFP systems for apples was established at the Cornell Orchards with the goal of systematically assessing these alternative systems using several new technologies that may make organic and IFP apple production a possibility in NY. Our objectives are to examine the effects of the differing management practices used in organic and IFP on orchard productivity, pest control efficacy, fruit quality, soil quality, ecological impacts, and economic sustainability. Once all these factors have been systematically analyzed, we hope to formulate horticultural guidelines that are transferable to growers producing apples by either organic or IFP systems.

Project member: Gregory Peck

| Home | Research | Publications | Collaborations | Tools | Labmeeting Schedule | Members |


Gateway Coupon
Gateway Coupon

All right reserved. Copyright © 2005-2006 by JiJY
Last updated: 3/9/06

Mites and springtails (C. Jones) Soil nematode (C. Jones) Soil ciliate (C. Jones) Soil arthropod (A. Hornor) Soil annelid (C. Jones) Metarhizium anisopliae, a soil fungus (C. Jones) Cornell University Crop and Soil Sciences Cornell University